Ocean plankton held hostage by pirate viruses

When plankton on the high seas catch a cold, the whole ocean may sneeze. Viruses hijacking these microbes could be an important overlooked factor in tracing how living things trap — or in this case, fail to trap — the climate-warming gas carbon dioxide.

Plants and other organisms that photosynthesize use energy from the sun to capture CO2 for food. The most abundant of these photosynthesizers on the planet are marine cyanobacteria with hardly any name recognition: Synechococcus and Prochlorococcus.
Now, for the first time, a study looks in detail at what happens when some of the abundant viruses found in the sea infect these microbes. Two viruses tested in the lab hijacked cell metabolism, allowing photosynthesis to continue but shunting the captured energy to virus reproduction. The normal use of that energy, capturing CO2, largely shuts down, David Scanlan of the University of Warwick in England and colleagues report online June 9 in Current Biology. As a result, people could be overestimating by 10 percent the amount of CO2 that photosynthesis in the oceans captures.

On any given day, 1 to 60 percent of these plankton may have picked up a viral infection, researchers have estimated. That means that between 0.02 and 5.39 petagrams of carbon — up to 5.39 billion metric tons — may not be captured by marine organisms a year. The high end of that scenario is equivalent to 2.8 times the CO2 routinely captured annually by all the planet’s salt marshes, coral reefs, estuaries, sea grass meadows and seaweeds put together.

Synechococcus and Prochlorococcus plankton “are organisms that you’ve never heard of but you really should have,” says Adam Martiny of the University of California, Irvine. He studies the same kinds of plankton but wasn’t involved in the new virus research, and what he appreciates about it is the intriguing biology of viral manipulation the new work has uncovered.

Until now, Scanlan says, the prevailing view was that while infected plankton were still alive, they were probably carrying on normal photosynthesis. As early as 2003, researchers had clues that the viruses attacking these tiny marine organisms might manipulate photosynthesis in some way, perhaps keeping the process running in an infected cell. These viruses have genes for proteins used in photosynthesis, even though a virus doesn’t even have its own cell much less a way to photosynthesize.

What the viruses are doing, Scanlan and his colleagues have now shown, is subverting their victim’s photosynthesis. Energy capture, the part of photosynthesis directly involved with light, goes on as usual; the cells carry out the routine electron transport for catching energy. But instead of using those sizzling electrons to capture CO2 and turn it into carbohydrates for basic cell metabolism, the viruses shut down this process (called carbon fixation). The light reactions are the ones that researchers normally measure to estimate how much carbon photosynthesis captures in the oceans, but the covert viral shunting means that estimate could be too high.

Scanlan cautions that this is just the beginning of working out the numbers and possible climate effects of virus diseases for these organisms. Whatever the current effects of this takeover turn out to be outside the lab, they may intensify as the climate changes. Synechococcus and Prochlorococcus are “projected to be winners in the new, warmer oceans” and may become even more numerous, Martiny says. And what’s good for them may also increase the abundance of the viral pirates that hijack them.

The 43-year history of journeys to Jupiter, in one graph

Since 1973, eight spacecraft have flown past or orbited Jupiter. On July 4, NASA’s Juno probe will become the planet’s ninth visitor.

Juno’s trajectory is different than all others, as seen in the plot above and in the video. For 20 months, Juno will repeatedly skim the cloud tops, looping over the poles on orbits that are almost perpendicular to Jupiter’s equator.

Most other spacecraft zipped by, using the planet’s gravity to speed them along to other destinations. Only Galileo, which arrived in 1995, stuck around; it spent nearly eight years circling Jupiter’s equator, repeatedly buzzing the four largest moons.

Baby birds’ brains selectively respond to dads’ songs

Young zebra finches (Taeniopygia guttata) learn to sing from a teacher, usually dad. Remembering dad’s tunes may even be hardwired into the birds’ brains.

Researchers at the Okinawa Institute of Science and Technology in Japan measured activity in the brains of male juvenile birds listening to recordings of singing adult males, including their fathers. The team focused its efforts on neurons in a part of the brain called the caudomedial nidopallium that’s thought to influence song learning and memory.

A subset of neurons in the caudomedial nidopallium lit up in response to songs performed by dad but not those of strangers, the team reports June 21 in Nature Communications. The more baby birds heard songs, the more their neurons responded and the clearer their own songs became. Sleep and a neurotransmitter called GABA influenced this selectivity.

The researchers suggest that this particular region of the brain stores song memories as finches learn to sing, and GABA may drive the storage of dad’s songs over others.
Researchers played a variety of sounds for young zebra finches: their own song, dad’s song and songs and calls from other adult finches. Over time, their songs became more and more similar to that of their father.

Making a mistake can put your brain on ‘pause’

Mistakes can be learning opportunities, but the brain needs time for lessons to sink in.

When facing a fast and furious stream of decisions, even the momentary distraction of noting an error can decrease accuracy on the next choice, researchers report in the March 15 Journal of Neuroscience.

“We have a brain region that monitors and says ‘you messed up’ so that we can correct our behavior,” says psychologist George Buzzell, now at the University of Maryland in College Park. But sometimes, that monitoring system can backfire, distracting us from the task at hand and causing us to make another error.
“There does seem to be a little bit of time for people, after mistakes, where you’re sort of offline,” says Jason Moser, a psychologist at Michigan State University in East Lansing, who wasn’t part of the study.

To test people’s response to making mistakes, Buzzell and colleagues at George Mason University in Fairfax, Va., monitored 23 participants’ brain activity while they worked through a challenging task. Concentric circles flashed briefly on a screen, and participants had to respond with one hand if the two circles were the same color and the other hand if the circles were subtly different shades.

After making a mistake, participants generally answered the next question correctly if they had a second or so to recover. But when the next challenge came very quickly after an error, as little as 0.2 seconds, accuracy dropped by about 10 percent. Electrical activity recorded from the visual cortex showed that participants paid less attention to the next trial if they had just made a mistake than if they had responded correctly.

The cognitive demand of noting and processing the error seems to divert attention that would otherwise be devoted to the task, Buzzell says.

In real life, people usually have time — even if just a few seconds — to reflect on a mistake before having to make another decision, says Jan Wessel, a psychologist at the University of Iowa in Iowa City. But in some activities such as driving a car or playing a musical instrument, people must rebound from errors quickly while continuing to correctly carry out the rest of the task, he says. Those actions might push the limits of error processing.

Tool use in sea otters doesn’t run in the family

Aside from being adorable, sea otters and Indo-Pacific bottlenose dolphins share an ecological feat: Both species use tools. Otters crack open snails with rocks, and dolphins carry cone-shaped sponges to protect their snouts while scavenging for rock dwelling fish.

Researchers have linked tool use in dolphins to a set of differences in mitochondrial DNA — which passes from mother to offspring — suggesting that tool-use behavior may be inherited. Biologist Katherine Ralls of the Smithsonian Institution in Washington, D.C., and her colleagues looked for a similar pattern in otters off the California coast. The team tracked diet (primarily abalone, crab, mussels, clams, urchins or snails) and tool use in the wild and analyzed DNA from 197 individual otters.

Otters that ate lots of hard-shelled snails — and used tools most frequently — rarely shared a common pattern in mitochondrial DNA, nor were they more closely related to other tool-users than any other otter in the population.

Unlike dolphins, sea otters may all be predisposed to using tools because their ancestors probably lived off mollusks, which required cracking open. However, modern otters only take up tools when their diet requires them, the researchers report March 21 in Biology Letters.

First fluorescent frogs might see each others’ glow

Could fluorescence matter to a frog? Carlos Taboada wondered. They don’t have bedroom black lights, but their glow may still be about the night moves.

Taboada’s question is new to herpetology. No one had shown fluorescence in amphibians, or in any land vertebrate except parrots, until he and colleagues recently tested South American polka dot tree frogs. Under white light, male and female Hypsiboas punctatus frogs have translucent skin speckled with dark dots. But when the researchers spotlighted the frogs with an ultraviolet flashlight, the animals glowed blue-green. The intensity of the glow was “shocking,” says Taboada of the Museo Argentino de Ciencias Naturales “Bernardino Rivadavia” in Buenos Aires.
And it is true fluorescence. Compounds in the frogs’ skin and lymph absorb the energy of shorter UV wavelengths and release it in longer wavelengths, the researchers report online March 13 in Proceedings of the National Academy of Sciences. But why bother, without a black bulb? Based on what he knows about a related tree frog’s vision, Taboada suggests that faint nocturnal light is enough to make the frogs more visible to their own kind. When twilight or moonlight reflects from their skin, the fluorescence accounts for 18 to 30 percent of light emanating from the frog, the researchers calculate.
Polka dot frogs, common in the Amazon Basin, have plenty to see in the tangled greenery where they breed. Males stake out multilevel territories in vast floating tangles of water hyacinths and other aquatic plants. When a territory holder spots a poaching male, frog grappling and wrestling ensues. Taboada can identify a distinctive short treble bleat “like the cry of a baby,” he says, indicating a frog fight.
Males discovering a female give a different call, which Taboada could not be coaxed to imitate over Skype. The polka dot frogs’ courtship is “complex and beautiful,” he says. For instance, a male has two kinds of secretion glands on the head and throat. During an embrace, he nudges and presses his alluring throat close to a female’s nose. If she breaks off the encounter, he goes back to clambering in rough figure eights among his hyacinths, patrolling for perhaps the blue-green ghost of another chance.

The most distant quasar ever spotted hails from the universe’s infancy

The most distant quasar yet spotted sends its light from the universe’s toddler years. The quasar, called J1342+0928, existed when the universe was only 690 million years old, right when the first stars and galaxies were forming.

Quasars are bright disks of gas and dust swirling around supermassive black holes. The black hole that powers J1342+0928 has a mass equivalent to 800 million suns, and it’s gobbling gas and dust so fast that its disk glows as bright as 40 trillion suns, Eduardo Bañados of the Carnegie Institution for Science in Pasadena, Calif., and his colleagues report December 6 in Nature.
“The newly discovered quasar gives us a unique photo of the universe when it was 5 percent [of] its present age,” Bañados says. “If the universe was a 50-year-old person, we would be seeing a photo of that person when she/he was 2 1/2 years old.”

This quasar is only slightly smaller than the previous distance record-holder, which weighs as much as 2 billion suns and whose light is 12.9 billion years old, emitted when the universe was just 770 million years old (SN: 7/30/11, p. 12). Scientists still aren’t sure how supermassive black holes like these grew so big so early.

“They either have to grow faster than we thought, or they started as a bigger baby,” says study coauthor Xiaohui Fan of the Steward Observatory in Tucson.

The temperature of the gas surrounding the newfound quasar places it squarely in the epoch of reionization (SN: 4/1/17, p. 13), when the first stars stripped electrons from atoms of gas that filled interstellar space. That switched the universe’s gas from mostly cold and neutral to hot and ionized. When this particular black hole formed, the universe was about half hot and half cold, Fan says.
“We’re very close to the epoch when the first-generation galaxies are appearing,” Fan says.

New Horizons’ next target might have a moon

NEW ORLEANS — The New Horizons team may get more than it bargained for with its next target. Currently known as 2014 MU69, the object might, in fact, be two rocks orbiting each other — and those rocks may themselves host a small moon.

MU69 orbits the sun in the Kuiper Belt, a region more than 6.5 billion kilometers from Earth. That distance makes it difficult to get pictures of the object directly. But last summer, scientists positioned telescopes around the globe to catch sight of MU69’s shadow as it passed in front of a distant background star (SN Online: 7/20/17), a cosmic coincidence known as an occultation.
Analyzing that flickering starlight raised the idea that MU69 might have two lobes, like a peanut, or might even be a pair of distinct objects. Whatever its shape, MU69 is not spherical and may not be alone, team members reported in a news conference on December 12 at the fall meeting of the American Geophysical Union.

Another stellar flicker sighting raised the prospect of a moon. On July 10, NASA’s airborne Stratospheric Observatory for Infrared Astronomy observed MU69 pass in front of a different star (SN: 3/19/16, p. 4). SOFIA saw what looked like a new, shorter dip in the star’s light. Comparing that data with orbit calculations from the European Space Agency’s Gaia spacecraft suggested that the blip could be another object around MU69.

A double object with a smaller moon could explain why MU69 sometimes shifts its position from where scientists expect it to be during occultations, said New Horizons team member Marc Buie of the Southwest Research Institute in Boulder, Colo.

The true shape will soon be revealed. The New Horizons spacecraft set its sights on the small space rock after flying past Pluto in 2015, and will fly past MU69 on January 1, 2019.

AI has found an 8-planet system like ours in Kepler data

Our solar system is no longer the sole record-holder for most known planets circling a star.

An artificial intelligence algorithm sifted through data from the planet-hunting Kepler space telescope and discovered a previously overlooked planet orbiting Kepler 90 — making it the first star besides the sun known to host eight planets. This finding, announced in a NASA teleconference December 14, shows that the kinds of clever computer codes used to translate text and recognize voices can also help discover strange new worlds.
The discovery, also reported in a paper accepted to the Astronomical Journal, can also help astronomers better understand the planetary population of our galaxy. “Finding systems like this that have lots of planets is a really neat way to test theories of planet formation and evolution,” says Jeff Coughlin, an astronomer at the SETI Institute in Mountain View, Calif., and NASA’s Ames Research Center in Moffett Field, Calif.

Kepler 90 is a sunlike star about 2,500 light-years from Earth in the constellation Draco. The latest addition to Kepler 90’s planetary family is a rocky planet about 30 percent larger than Earth called Kepler 90i. It, too, is the third planet from its sun — but with an estimated surface temperature higher than 400° Celsius, it’s probably not habitable.

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The seven previously known planets in this system range from small, rocky worlds like Kepler 90i to gas giants, which are all packed closer to their star than Earth is to the sun. “It’s very possible that Kepler 90 has even more planets,” study coauthor Andrew Vanderburg, an astronomer at the University of Texas at Austin, said in the teleconference. “There’s a lot of unexplored real estate in the Kepler 90 system.”
Astronomers have identified over 2,300 new planets in Kepler data by searching for tiny dips in a star’s brightness when a planet passes in front of it. Kepler has collected too much data for anyone to go through it all by hand, so humans or computer programs typically only verify the most promising signals of the bunch. That means that worlds that produce weaker light dips — like Kepler 90i — can get passed over. Vanderburg and Christopher Shallue, a software engineer at Google in Mountain View, Calif., designed a computer code called a neural network, which mimics the way the human brain processes information, to seek out such overlooked exoplanets.
Researchers previously automated Kepler data analysis by hard-coding programs with rules about how to detect bona fide exoplanet signals, Coughlin explains. Here, Vanderburg and Shallue provided their code with more than 10,000 Kepler signals that had been labeled by human scientists as either exoplanet or non-exoplanet signals. By studying these examples, the neural network learned on its own what the light signal of an exoplanet looked like, and could then pick out the signatures of exoplanets in previously unseen signals.

The fully trained neural network examined 670 star systems known to host multiple planets to see whether previous searches had missed anything. It spotted Kepler 90i, as well as a sixth, Earth-sized planet around the star Kepler 80. This feat marks the first time a neural network program has successfully identified new exoplanets in Kepler data, Jessie Dotson, an astrophysicist at NASA’s Ames Research Center said at the teleconference.

Vanderburg and Shallue now plan to apply their neural network to Kepler’s full cache of data on more than 150,000 stars, to see what other unrecognized exoplanets it might turn up.

Coughlin is also excited about the prospect of using artificial intelligence to assess data from future exoplanet search missions, like NASA’s TESS satellite set to launch next year. “The hits are going to keep on coming,” regarding potential exoplanet signals, he says. Having self-taught computer programs help humans slog through the data could significantly speed up the rate of scientific discovery.

Specks in the brain attract Alzheimer’s plaque-forming protein

Globs of an inflammation protein beckon an Alzheimer’s protein and cause it to accumulate in the brain, a study in mice finds. The results, described in the Dec. 21/28 Nature, add new details to the relationship between brain inflammation and Alzheimer’s disease.

Researchers suspect that this inflammatory cycle is an early step in the disease, which raises the prospect of being able to prevent the buildup of amyloid-beta, the sticky protein found in brains of people with Alzheimer’s disease.
“It is a provocative paper,” says immunologist Marco Colonna of Washington University School of Medicine in St. Louis. Finding an inflammatory protein that can prompt A-beta to clump around it is “a big deal,” he says.

Researchers led by Michael Heneka of the University of Bonn in Germany started by studying specks made of a protein called ASC that’s produced as part of the inflammatory response. (A-beta itself is known to kick-start this inflammatory process.) Despite being called specks, these are large globs of protein that are created by and then ejected from brain immune cells called microglia when inflammation sets in. A-beta then accumulates around these ejected ASC specks in the space between cells, Haneke and colleagues now propose.
A-beta can directly latch on to ASC specks, experiments in lab dishes revealed. The two proteins were also caught in close contact in brain tissue taken from people with Alzheimer’s disease. Researchers didn’t see any ASC specks mingling with A-beta in the brains of people without the disease.
Mice engineered to produce lots of A-beta had telltale signs of its accumulation in their brains at 8 and 12 months of age, roughly comparable to middle age in people. But in mice that also lacked the ability to produce ASC specks, this A-beta brain load was much lighter, and these mice performed better on a memory test. Similar reductions in A-beta loads came when researchers used an antibody to prevent A-beta from sticking to ASC specks, results that suggest the specks are needed for A-beta to clump up.

The details show “a quite new and specific mechanism” that’s worth exploring for potential treatments, says Richard Ransohoff, a neuroinflammation biologist at Third Rock Ventures, a venture capital firm in Boston.

To be effective as a treatment, an antibody like the one in the study that kept A-beta from sticking to ASC would need to be able to enter the brain and persist at high levels — a big challenge, Ransohoff says. Still, the results are promising, he says. “I like the data. I like the line of experimentation.”

Many questions remain. The results are mainly from mice, and it’s not clear whether ASC specks and A-beta have similar interactions in human brains. Nor is it obvious how to stop the A-beta from accumulating around the specks without affecting the immune system more generally.

What’s more, the role of the microglia immune cells that release ASC specks is complex, Colonna says. In some cases, microglia serve as brain protectors by surrounding and sequestering sticky A-beta plaques in the brain (SN: 11/30/13, p. 22). But the current results suggest that by releasing ASC specks, the same cells can also make A-beta accumulation worse. The dueling roles of the cells — protective in some cases and potentially harmful in others — make it challenging to figure out how to tweak their behavior therapeutically, Colonna says.